PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021428
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 324aa    MW: 36260.5 Da    PI: 8.1467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021428genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d++ ++G+g +W + +++ g++R++k+c++rw++yl
      Lus10021428 14 KGPWSPEEDAKLKDYIDKFGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding383.9e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
      Lus10021428  69 GEFSDDEDRIICSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.161962IPR017930Myb domain
SuperFamilySSF466891.64E-2611109IPR009057Homeodomain-like
SMARTSM007171.1E-111364IPR001005SANT/Myb domain
PfamPF002491.6E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-241569IPR009057Homeodomain-like
CDDcd001676.22E-91662No hitNo description
PROSITE profilePS5129421.51663117IPR017930Myb domain
SMARTSM007178.4E-1267115IPR001005SANT/Myb domain
PfamPF002495.6E-1169111IPR001005SANT/Myb domain
CDDcd001671.87E-870113No hitNo description
Gene3DG3DSA:1.10.10.606.0E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYID KFGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMSM  120
SPHNFPNKHH HPLQRSKPFH QFHPSSSLVP QTNFNFLSSF ITSPPPITTT NGFDPMANNS  180
FPSNPNTLLQ TLQDGTSTLL STMQLYNGTP SNNLLVFGSG GKDHQVASCS SNSDGSRGGK  240
DVGQQQVKQE EVNIYSQSYG GYGDHNHQKF MLSYGNGFDE FGGGVHLEEE VKKMIINNDD  300
DHNDNSNLMV NVLDQEKAMY YYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314299.11e-103hypothetical protein POPTR_0009s01270g
SwissprotQ9FKL21e-80MYB36_ARATH; Transcription factor MYB36
TrEMBLB9HQM81e-103B9HQM8_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01270.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-78myb domain protein 36